Simple SNP calling pipeline in Linux
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W8: Variant Calling with GATK - Day 1
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BroadE: GATK/Variant calling and joint genotyping (2015)
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Basic SNPeff Tutorial (using custom database)
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Introduction To Linux For Bioinformatics | BioCode Ltd
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Small-Variant Calling and Annotation
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Introduction to Burrows-Wheeler Alignment and Samtools for Cancer Mutation Calling Bioinformatics 1
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